Java Treeview is shipped with a set of link templates, available under "Settings->Url Settings...", for common databases. However, there are many more databases available.
To use these templates, either paste them into the "Settings->Url Settings" dialog, or if you are likely to use a particular one often, go to "Settings->Presets->Gene Url Presets" and make a preset for it.
| Name | Template |
|---|---|
| SGD | http://genome-www4.stanford.edu/cgi-bin/SGD/locus.pl?locus=HEADER |
| WormBase | http://www.wormbase.org/db/searches/basic?class=AnyGene&query=HEADER&Search=Search |
| Source_CloneID (same as SUID?) | http://genome-www4.stanford.edu/cgi-bin/SMD/source/sourceResult?option=CloneID&choice=Gene&criteria=HEADER |
| FlyBase | http://flybase.bio.indiana.edu/.bin/fbgenq.html?HEADER |
| MouseGD | http://www.informatics.jax.org/javawi/servlet/SearchTool?query=HEADER&selectedQuery=Genes+and+Markers |
| GenomeNetEcoli | http://www.genome.ad.jp/dbget-bin/www_bget?eco:HEADER |
| Name | Template |
|---|---|
| GenProtEC | http://genprotec.mbl.edu/findgene.htf?G=HEADER |
| EcoCyc | http://ecocyc.PangeaSystems.com:1555/substring-search?type=ENZYME&object=HEADER |
| Source_LUID | http://genome-www4.stanford.edu/cgi-bin/SMD/source/sourceRedirectLUID.pl?luid=HEADER |
| YPD | http://www.proteome.com/databases/YPD/reports/HEADER.html |
| PUMAdb ORF redirection | http://puma.princeton.edu/cgi-bin/tools/redirectNameLookup.pl?db=sgd&id=HEADER |
When the template is used, the text "HEADER" is filled in, and a browser window is opened with the resulting URL.